Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3072KEGG: mlo:mll3560 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Meso_3071
Cobaltochelatase CobT subunit; KEGG: mlo:mll3561 CobT protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A.
       0.838
Meso_3070
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: atc:AGR_C_4363 hypothetical protein.
       0.728
Meso_3018
PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mlr3470 similar to polysaccharide biosynthesis related protein.
  
     0.690
Meso_1153
KEGG: mlo:mll8434 hypothetical protein.
  
     0.686
Meso_3069
TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: bme:BMEI0049 CobS protein.
       0.681
Meso_1409
KEGG: atc:AGR_C_2493 hypothetical protein.
  
     0.639
Meso_3068
PFAM: heat shock protein DnaJ-like; KEGG: mlo:mll3564 hypothetical protein.
       0.616
Meso_0917
KEGG: mlo:msr7720 hypothetical protein.
  
     0.614
Meso_1158
KEGG: mlo:mll8447 hypothetical protein.
  
     0.589
Meso_0172
Phasin; TIGRFAM: phasin; KEGG: mlo:mlr6541 hypothetical protein.
  
     0.584
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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