Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3081PFAM: Methyltransferase type 11; KEGG: mlo:mll3545 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.920
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
    
 0.819
Meso_3082
PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpa:RPA3112 2-nitropropane dioxygenase.
       0.780
gloB
Beta-lactamase-like protein; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.698
Meso_1755
PFAM: DNA polymerase III chi subunit, HolC; KEGG: mlo:mlr7869 putative DNA polymerase III chi subunit.
  
     0.630
Meso_3923
Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: atc:AGR_C_630 hypothetical protein.
  
     0.616
Meso_2145
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mlo:mlr2667 probable two-component sensor.
  
     0.600
Meso_0944
PFAM: protein of unknown function DUF88; KEGG: mlo:mll7752 hypothetical protein.
  
     0.574
Meso_0958
PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: sme:SMc02559 hypothetical protein.
  
     0.517
Meso_0423
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: bmb:BruAb2_0194 hydrolase, haloacid dehalogenase-like family.
 
     0.515
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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