Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3097TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein. (862 aa)    
Predicted Functional Partners:
Meso_2180
KEGG: mlo:mlr2732 hypothetical protein.
  
   
 0.779
Meso_2181
TIGRFAM: conserved hypothetical membrane protein; KEGG: mlo:mlr2734 hypothetical protein.
  
    0.778
Meso_2182
PFAM: protein of unknown function DUF1355; KEGG: mlo:mlr2735 hypothetical protein.
  
     0.774
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
   
   0.759
Meso_1810
PFAM: glycoside hydrolase, family 3-like; KEGG: mlo:mll1089 probable sugar hydrolase.
 
  
 0.745
tolB
TolB-like protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   0.737
Meso_1380
KEGG: mlo:mll0656 hypothetical protein.
  
     0.728
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.722
Meso_3257
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr3815 hypothetical protein.
 
   
 0.698
Meso_0710
KEGG: sme:SMc00859 hypothetical/unknown protein.
 
     0.628
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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