Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3101PFAM: PRC-barrel; KEGG: mlo:mll3685 hypothetical protein. (400 aa)    
Predicted Functional Partners:
Meso_3143
KEGG: noc:Noc_1592 hypothetical protein.
 
  
  0.842
Meso_3109
PFAM: response regulator receiver Sigma-70, region 4 type 2; KEGG: mlo:mlr3700 two-component response regulator.
 
    0.654
Meso_2075
PFAM: protein of unknown function UPF0118; KEGG: mlo:mlr4869 hypothetical protein.
 
     0.624
Meso_3392
PFAM: protein of unknown function DUF1328; KEGG: mlo:msr4317 hypothetical protein.
 
     0.622
Meso_3102
PFAM: diacylglycerol kinase, catalytic region; KEGG: mlo:mlr3686 similar to multidrug resistance protein BmrU.
 
     0.577
Meso_3098
KEGG: mlo:msl3681 hypothetical protein.
 
     0.529
Meso_3105
PFAM: protein of unknown function UPF0118; KEGG: bja:bll1467 hypothetical protein.
 
     0.517
Meso_3107
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: mlo:mll3697 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.504
Meso_3342
PFAM: protein of unknown function DUF1236 protein of unknown function DUF1058 SH3, type 3; KEGG: ret:RHE_CH03012 hypothetical protein.
 
     0.504
Meso_1483
PFAM: GAF HWE histidine kinase; KEGG: sme:SMa1696 hypothetical protein.
 
    0.500
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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