Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
Databases
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[Homology]
Score
Meso_3109PFAM: response regulator receiver Sigma-70, region 4 type 2; KEGG: mlo:mlr3700 two-component response regulator. (265 aa)    
Predicted Functional Partners:
Meso_3108
KEGG: mlo:msl3698 hypothetical protein.
   
   0.927
Meso_0600
CheA signal transduction histidine kinase; PFAM: response regulator receiver CheW-like protein ATP-binding region, ATPase-like Hpt; KEGG: sme:SMa1558 putative histidine kinase, chemotaxis.
  
 0.924
Meso_3107
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: mlo:mll3697 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.916
Meso_1483
PFAM: GAF HWE histidine kinase; KEGG: sme:SMa1696 hypothetical protein.
 
 
 
 0.867
Meso_1740
Cell cycle control histidine kinase CckA; KEGG: mlo:mll0767 sensor kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS.
  
 
 0.854
Meso_0304
PFAM: surface presentation of antigens (SPOA) protein; KEGG: mlo:mll2904 flagellar motor switch protein FliM.
  
 
 0.850
Meso_3680
Multi-sensor hybrid histidine kinase; KEGG: mlo:mlr3215 two-component sensor/response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; SMART: PAS.
  
 0.848
Meso_0620
KEGG: sme:SMa0113 putative sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.838
Meso_1904
KEGG: ret:RHE_PE00024 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
  
 0.834
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: mlo:mlr2913 flagellar hook-basal body protein fleE.
  
 
 0.809
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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