Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3114Xylose-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH03172 xylose ABC transporter, substrate-binding protein. (347 aa)    
Predicted Functional Partners:
Meso_3113
PFAM: inner-membrane translocator; KEGG: mlo:mll3711 xylose transport permease protein xylH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.985
Meso_3112
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll3710 ABC-transport system ATP binding protein; TC 3.A.1.2.-.
 
 
 0.982
Meso_0840
Multiple monosaccharide ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: atc:AGR_C_4262 membrane-spanning permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.841
Meso_3115
PFAM: ROK domain containing protein; KEGG: mlo:mlr3714 Xyl repressor.
 
     0.688
Meso_0839
PFAM: ABC transporter related; SMART: ATPase; KEGG: atu:Atu2347 ABC transporter, nucleotide binding/ATPase protein [sugar].
 
 
 0.682
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase-like TIM barrel; KEGG: mlo:mlr5036 xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.654
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr5033 xylulokinase.
 
   
 0.509
Meso_3707
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: sme:SMb20854 putative sugar uptake ABC transporter permease protein; TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.430
Meso_1606
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: atc:AGR_L_2595 ribose ABC transporter (permease); TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.422
Meso_1607
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: inner-membrane translocator; KEGG: atc:AGR_L_2593 ribose ABC transporter (permease); TC 3.A.1.2.-; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.419
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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