Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3131PFAM: extracellular solute-binding protein, family 5; KEGG: gsu:GSU1433 peptide ABC transporter, periplasmic peptide-binding protein. (508 aa)    
Predicted Functional Partners:
Meso_3133
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein.
 
  0.883
Meso_3130
PFAM: regulatory protein GntR, HTH; KEGG: sth:STH2673 GntR family transcriptional regulator.
 
     0.858
Meso_3132
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1241 oligopeptide ABC transporter permease.
 
   0.858
Meso_1504
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_321 dipeptide transport system permease protein DppC.
 
  0.712
Meso_0401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein.
 
  0.681
Meso_1857
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein.
 
  0.669
Meso_0075
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7564 putative oligopeptide ABC transporter integral membrane protein.
 
   0.668
Meso_1952
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20142 putative oligopeptide ABC transporter permease protein.
 
  0.663
Meso_2406
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_4129 binding-protein-dependent transport systems inner membrane component.
 
  0.655
Meso_0461
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cdi:DIP1742 putative oligopeptide ABC transport system membrane protein.
 
  0.654
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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