Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3140PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsp:RSP_3441 hypothetical protein. (239 aa)    
Predicted Functional Partners:
Meso_2505
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bms:BRA1159 fumarylacetoacetate hydrolase family protein.
      0.899
Meso_3139
PFAM: dihydrodipicolinate synthetase; KEGG: rpa:RPA3190 possible dihydrodipicoline synthase related protein; Belongs to the DapA family.
 
     0.899
Meso_3545
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bms:BR0244 fumarylacetoacetate hydrolase family protein.
      0.849
Meso_3142
PFAM: protein of unknown function DUF1469; KEGG: rsp:RSP_2383 putative integral membrane protein.
 
    0.538
Meso_3138
SMART: Parallel beta-helix repeat; KEGG: mma:MM1983 hypothetical protein.
  
    0.506
Meso_2901
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_A1135 5-carboxymethyl-2-hydroxymuconate delta-isomerase.
      0.505
Meso_3141
KEGG: jan:Jann_2209 hypothetical protein.
 
     0.474
Meso_1049
PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein.
 
     0.464
Meso_1079
PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein.
 
     0.449
Meso_3143
KEGG: noc:Noc_1592 hypothetical protein.
       0.407
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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