Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3150Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation Cupin 2, conserved barrel; KEGG: bbr:BB0428 probable transcriptional regulator. (262 aa)    
Predicted Functional Partners:
Meso_3151
PFAM: Alpha/beta hydrolase fold-3; KEGG: bpe:BP0285 putative acetyl esterase.
     
 0.610
Meso_3152
PFAM: Cupin 2, conserved barrel; KEGG: pst:PSPTO3051 2,4'-dihydroxyacetophenone dioxygenase.
  
   0.584
Meso_3153
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B3149 short-chain dehydrogenase/reductase SDR.
       0.532
Meso_0577
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP2383 transcriptional regulator, AraC family.
  
     0.504
Meso_3149
PFAM: extracellular solute-binding protein, family 3; KEGG: blo:BL1118 probable amino-acid binding protein for ABC transporter system; TC 3.A.1.3.-.
       0.485
Meso_2053
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.457
Meso_3154
TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: atc:AGR_L_3029 hypothetical protein.
       0.430
Meso_0811
PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: fra:Francci3_2810 FAD-binding 9, siderophore-interacting.
  
    0.410
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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