Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3157KEGG: mlo:mll3872 hypothetical protein. (544 aa)    
Predicted Functional Partners:
Meso_0939
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.773
Meso_1131
KEGG: mlo:mlr8393 hypothetical protein.
  
    0.772
Meso_1010
KEGG: mlo:mlr0912 hypothetical protein.
  
     0.764
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
 
     0.762
Meso_0717
KEGG: mlo:mlr7441 hypothetical protein.
  
     0.752
Meso_1741
KEGG: mlo:mlr0769 hypothetical protein.
 
     0.748
Meso_3664
PFAM: protein of unknown function DUF1150; KEGG: mlo:msr3193 contains weak similarity to NADH oxidase.
  
     0.743
Meso_1460
KEGG: mlo:mll0525 hypothetical protein.
  
     0.742
Meso_0881
KEGG: mlo:mll7655 hypothetical protein.
  
     0.737
Meso_0879
PFAM: protein of unknown function DUF1491; KEGG: mlo:mlr7652 hypothetical protein.
  
    0.736
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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