Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3165PFAM: porin, opacity type; KEGG: mlo:mll3878 hypothetical protein. (282 aa)    
Predicted Functional Partners:
Meso_1984
AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein.
  
   
 0.740
Meso_3998
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mlo:mlr5598 pilus assembly protein cpaD.
  
     0.731
Meso_1014
KEGG: atc:AGR_C_3197 hypothetical protein.
  
     0.717
Meso_2738
KEGG: mlo:mlr3024 hypothetical protein.
  
     0.714
Meso_2154
KEGG: sme:SMc02685 hypothetical protein.
  
     0.712
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
  
     0.708
Meso_0939
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 0.697
Meso_0881
KEGG: mlo:mll7655 hypothetical protein.
  
     0.689
Meso_0717
KEGG: mlo:mlr7441 hypothetical protein.
  
     0.687
Meso_3019
KEGG: mlo:mlr3471 hypothetical protein.
  
     0.680
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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