Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpmELSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (73 aa)    
Predicted Functional Partners:
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.978
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
  
 
 0.977
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.976
rpsP
PFAM: ribosomal protein S16; KEGG: bmb:BruAb1_1803 RpsP, ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.975
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ret:RHE_CH04015 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.975
rplS
LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.975
rpmB
PFAM: ribosomal protein L28; KEGG: bmb:BruAb1_1990 RpmB, ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.973
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.972
rpmG
PFAM: ribosomal protein L33; KEGG: bmb:BruAb2_0615 RpmG, ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.966
rpsI
PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.965
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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