Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3194PFAM: Integral membrane protein TerC; KEGG: bms:BR1721 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Meso_2122
PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: mlo:mlr2581 hemolysin.
      0.902
Meso_3196
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mlo:mll3954 hypothetical protein.
       0.643
Meso_3195
TIGRFAM: conserved hypothetical protein; PFAM: metallophosphoesterase; KEGG: mlo:mll3953 hypothetical protein.
       0.618
Meso_3066
PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: sme:SMc00697 hypothetical protein.
 
      0.411
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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