Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3198PFAM: protein of unknown function DUF1332; KEGG: mlo:mll4217 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Meso_3197
PFAM: glutamine amidotransferase class-I; KEGG: mlo:mll4216 glutamine amidotransferase.
 
     0.836
Meso_3199
PFAM: HemY-like Tetratricopeptide TPR_2; KEGG: mlo:mll4218 weak similarity to E. coli HemY protein.
 
     0.710
Meso_3200
KEGG: mlo:mll4219 putative phage tail protein.
       0.527
Meso_0669
KEGG: ret:RHE_CH00018 hypothetical protein.
  
     0.487
Meso_0172
Phasin; TIGRFAM: phasin; KEGG: mlo:mlr6541 hypothetical protein.
  
     0.476
Meso_3201
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.472
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.472
Meso_3345
KEGG: mlo:mlr4354 hypothetical protein.
  
     0.470
Meso_3210
KEGG: mlo:mll4075 hypothetical protein.
  
     0.457
Meso_3205
PFAM: YCII-related; KEGG: ret:RHE_CH03901 hypothetical protein.
 
     0.438
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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