STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
tsaDO-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (362 aa)    
Predicted Functional Partners:
Meso_3916
PFAM: peptidase M22, glycoprotease; KEGG: mlo:mlr5530 hypothetical protein.
  
 0.974
Meso_3578
PFAM: aminoglycoside phosphotransferase protein of unknown function UPF0079; KEGG: mlo:mll5086 hypothetical protein.
 
 0.968
Meso_0675
Mn2+-dependent serine/threonine protein kinase; KEGG: bmb:BruAb1_2096 hypothetical protein.
  
 0.943
gpsA
PFAM: UBA/THIF-type NAD/FAD binding fold NADP oxidoreductase, coenzyme F420-dependent NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; KEGG: mlo:mlr4225 glycerol-3-phosphate dehydrogenase.
       0.838
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
     
 0.763
Meso_0715
Translation factor SUA5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
  
 0.720
Meso_3205
PFAM: YCII-related; KEGG: ret:RHE_CH03901 hypothetical protein.
       0.702
Meso_3201
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
  
 0.689
Meso_3206
PFAM: protein of unknown function DUF55; KEGG: bhe:BH16120 hypothetical protein.
     
 0.665
pheS
TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc aminoacyl tRNA synthetase, class II-like; KEGG: mlo:mll5055 phenylalanyl-tRNA synthetase, alpha-subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
   
 0.618
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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