Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3231KEGG: mlo:mlr4119 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Meso_3232
PFAM: protein of unknown function DUF167; KEGG: mlo:msl4154 hypothetical protein; Belongs to the UPF0235 family.
       0.786
Meso_3233
TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sme:SMc03818 putative exodeoxyribonuclease III protein.
       0.773
Meso_1296
KEGG: mlo:mll0095 hypothetical protein.
  
     0.649
Meso_3130
PFAM: regulatory protein GntR, HTH; KEGG: sth:STH2673 GntR family transcriptional regulator.
  
     0.630
Meso_2167
KEGG: sme:SMc00337 hypothetical/unknown protein.
  
     0.623
Meso_3234
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
       0.618
Meso_1286
KEGG: mlo:mll0081 hypothetical protein.
  
     0.580
Meso_1158
KEGG: mlo:mll8447 hypothetical protein.
  
     0.571
Meso_0973
KEGG: mlo:mll1459 hypothetical protein.
  
     0.537
Meso_2209
KEGG: mlo:mll2809 hypothetical protein.
  
     0.512
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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