Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_3240PFAM: OsmC-like protein; KEGG: mlo:mlr4254 osmotically inducible protein C, putative ATP/GTP binding protein. (146 aa)    
Predicted Functional Partners:
Meso_3239
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: mlo:mlr4251 2-octaprenyl-6-methoxyphenol 4-monoxygenase, ubiH.
  
    0.731
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
  
  
 0.704
Meso_3104
PFAM: protein of unknown function DUF883, ElaB; KEGG: mlo:mll3692 hypothetical protein.
   
  
 0.652
Meso_1784
PFAM: protein of unknown function DUF1508; KEGG: ret:RHE_CH03509 hypothetical protein.
   
    0.649
Meso_0255
PFAM: PrkA serine kinase PrkA AAA; KEGG: sme:SMc01267 serine protein kinase.
   
    0.588
Meso_1484
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI; KEGG: bja:bll8044 proteinase.
  
  
 0.570
Meso_3238
TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: bms:BR1898 acyl-CoA thioesterase II.
     
 0.568
Meso_1142
PFAM: SmpA/OmlA; KEGG: mlo:mll8419 hypothetical protein.
   
  
 0.544
Meso_1219
PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
  
 0.534
Meso_4008
PFAM: CsbD-like; KEGG: hch:HCH_05492 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.534
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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