Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3259TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily thiamine ABC transporter, periplasmic binding protein; KEGG: mlo:mll3867 thiamin ABC transporter, periplasmic-binding protein. (332 aa)    
Predicted Functional Partners:
Meso_3260
TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3865 transport system permease protein.
 
 
 0.996
thiQ
ABC transporter, ATPase subunit, ThiQ subfamily; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.
 
 
  0.994
Meso_0169
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00775 putative iron(III) permease protein.
  
 
 0.530
Meso_0827
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4775 putative iron(III)-transport system permease.
  
 
 0.530
Meso_2660
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1307 similar to ABC-type Fe3+ transport system permease component.
  
 
 0.530
Meso_3262
PFAM: peptidase M48, Ste24p; KEGG: mlo:mll3863 hypothetical protein.
       0.477
Meso_2062
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll1660 dipeptide binding protein component of ABC transporter.
  
  
  0.442
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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