Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Meso_3268PFAM: HpcH/HpaI aldolase; KEGG: mlo:mlr4422 citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family. (297 aa)    
Predicted Functional Partners:
Meso_3538
PFAM: HpcH/HpaI aldolase; KEGG: cpe:CPE1148 citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.926
Meso_1012
PFAM: HpcH/HpaI aldolase; KEGG: mlo:mlr0906 citrate lyase beta chain; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.920
Meso_3267
KEGG: mlo:msr4423 hypothetical protein.
       0.805
Meso_1013
PFAM: MaoC-like dehydratase; KEGG: mlo:mlr0905 probable monoamine oxidase regulatory protein.
 
  
 0.706
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.618
Meso_2657
PFAM: MmgE/PrpD; KEGG: cvi:CV1809 hypothetical protein.
 
  
 0.596
Meso_0856
TIGRFAM: methylmalonyl-CoA mutase, large subunit Methylmalonyl-CoA mutase-like; PFAM: methylmalonyl-CoA mutase cobalamin B12-binding; KEGG: mlo:mll7619 methylmalonyl-CoA large subunit.
 
  
 0.526
Meso_3292
PFAM: MaoC-like dehydratase; KEGG: bbr:BB4751 hypothetical protein.
 
  
 0.462
Meso_4030
PFAM: phosphate acetyl/butaryl transferase malic enzyme-like malic enzyme, NAD-binding; KEGG: mlo:mlr5329 NADP-dependent malic enzyme.
 
  
 0.439
Meso_3244
TIGRFAM: succinate dehydrogenase, flavoprotein subunit succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; KEGG: bme:BMEI0161 succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
    0.421
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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