Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3271PFAM: peptidase S16, lon-like; KEGG: mlo:mll4430 contains similarity to ATP-dependent protease. (223 aa)    
Predicted Functional Partners:
Meso_3270
PFAM: protein of unknown function DUF343; KEGG: mlo:msl4429 hypothetical protein; Belongs to the UPF0434 family.
       0.715
Meso_3272
TIGRFAM: thioredoxin; PFAM: Tetratricopeptide TPR_4 Thioredoxin domain; KEGG: mlo:mll4432 thioredoxin.
 
  
 0.704
groL1
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
 0.506
Meso_2368
Chaperonin Cpn60/TCP-1; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Belongs to the chaperonin (HSP60) family.
    
 0.506
groL2
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
 0.506
Meso_0541
PFAM: SNF2-related helicase-like type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase-like; KEGG: ecc:c5378 hypothetical protein.
   
  0.454
Meso_0004
PFAM: UBA/THIF-type NAD/FAD binding fold MoeZ/MoeB; KEGG: mlo:mll5577 molybdenum cofactor biosynthesis protein.
    
 0.422
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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