Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_3282Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: chy:CHY_0434 transcriptional regulator, GntR family. (261 aa)    
Predicted Functional Partners:
Meso_3552
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMa0267 putative GntR-family regulator.
  
  
 0.758
Meso_1061
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:bll2319 transcriptional regulatory protein.
  
  
 0.755
Meso_1948
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: atc:AGR_L_3331 hypothetical protein.
  
     0.755
Meso_1867
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pfo:Pfl_3228 regulatory protein GntR, HTH.
 
     0.751
Meso_2514
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: psp:PSPPH_2055 transcriptional regulator, GntR family.
  
  
 0.749
Meso_3280
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr2779 hypothetical protein; Belongs to the CoA-transferase III family.
  
    0.737
Meso_3281
PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: tfu:Tfu_1647 acyl-CoA dehydrogenase.
     
 0.727
Meso_2357
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr7177 transcriptional regulator.
  
  
 0.722
Meso_2933
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dar:Daro_3790 regulatory protein GntR, HTH:GntR, C-terminal.
  
  
 0.706
Meso_0790
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:blr7971 transcriptional regulatory protein.
  
  
 0.702
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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