Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3301PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: sbo:SBO_2185 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Meso_0433
Kef-type potassium/proton antiporter, CPA2 family; TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: bms:BRA0210 glutathione-regulated potassium-efflux system protein, putative; TC 2.A.37.1; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 0.974
Meso_3302
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ecj:JW0883 predicted DNA-binding transcriptional regulator.
       0.531
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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