Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3307PFAM: regulatory proteins, IclR; KEGG: sil:SPOA0143 transcriptional regulator, IclR family. (269 aa)    
Predicted Functional Partners:
Meso_2307
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sma:SAV3701 putative IclR-family transcriptional regulator.
  
     0.769
Meso_3310
PFAM: alanine racemase-like; KEGG: jan:Jann_2604 alanine racemase-like.
 
    0.744
Meso_3303
Transcriptional regulator, IclR family; PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sth:STH2538 transcriptional regulator.
  
     0.740
Meso_3309
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: cps:CPS_4888 putative threonine dehydratase, catabolic.
 
    0.663
Meso_3308
Serine-glyoxylate aminotransferase apoenzyme; PFAM: aminotransferase, class V; KEGG: sil:SPOA0144 serine--glyoxylate transaminase, putative.
 
    0.634
Meso_3311
PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: jan:Jann_2605 ornithine cyclodeaminase.
 
     0.634
Meso_3306
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ret:RHE_CH00560 cold shock protein.
       0.433
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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