Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Meso_3315PFAM: protein of unknown function DUF112, transmembrane; KEGG: sme:SMb20726 conserved hypothetical membrane protein. (505 aa)    
Predicted Functional Partners:
Meso_3313
PFAM: Uncharacterized protein UPF0065; KEGG: ret:RHE_CH03584 hypothetical protein.
 
    0.953
Meso_3314
KEGG: sme:SMb20725 putative tricarboxylic transport membrane protein.
 
  
 0.884
Meso_2509
PFAM: Uncharacterized protein UPF0065; KEGG: sme:SMb20724 putative tricarboxylic transport membrane protein.
 
    0.832
Meso_1846
PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4598 uncharacterized protein UPF0065.
 
    0.830
Meso_2399
PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1912 uncharacterized protein UPF0065.
 
    0.828
Meso_3288
PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3558 uncharacterized protein UPF0065.
 
    0.827
Meso_3300
PFAM: Uncharacterized protein UPF0065; KEGG: ecc:c4776 hypothetical protein.
 
    0.826
Meso_3968
PFAM: Uncharacterized protein UPF0065; KEGG: bja:bll3051 hypothetical protein.
 
    0.826
Meso_1072
PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein.
 
    0.824
Meso_2389
PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB3868 hypothetical protein.
 
    0.821
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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