Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3335TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bmb:BruAb1_1762 hypothetical D-beta-hydroxybutyrate dehydrogenase. (260 aa)    
Predicted Functional Partners:
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.910
Meso_0168
TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mlr6539 acetoacetyl-CoA synthetase.
    
 0.901
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
  
 0.760
Meso_3336
KEGG: mlo:mlr8427 hypothetical protein.
       0.594
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.465
Meso_3682
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PB00044 putative short chain oxidoreductase protein.
  
 
  0.451
Meso_1320
PFAM: phosphopantetheine-binding; KEGG: ret:RHE_CH02478 acyl carrier protein.
  
 0.420
Meso_2883
KEGG: sme:SMb20651 hypothetical protein.
  
 0.420
Meso_0980
KEGG: mlo:mll7824 2-acylglycerophosphoethanolamine acyl transferase/acyl carrier protein synthetase.
  
 0.418
Meso_3522
PFAM: short-chain dehydrogenase/reductase SDR SEC-C motif; KEGG: sme:SMc01204 putative transmembrane oxidoreductase protein oxidoreductase.
 
 
 
0.413
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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