Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3352PFAM: protein of unknown function DUF214; KEGG: mlo:mll4345 hypothetical protein, hypothetical integral membrane protein. (869 aa)    
Predicted Functional Partners:
Meso_3351
PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll4346 ABC transporter, ATP-binding protein.
 
 
 
 0.978
Meso_3350
PFAM: lipolytic enzyme, G-D-S-L; KEGG: mlo:mlr4347 acyl-CoA thioesterase.
 
 
   0.967
Meso_1540
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS protein of unknown function DUF140; KEGG: mlo:mll0801 putative ABC transport system permease protein.
   
 
 0.641
Meso_3353
PFAM: protein of unknown function UPF0005; KEGG: ret:RHE_CH03940 hypothetical protein; Belongs to the BI1 family.
       0.553
Meso_3349
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.511
Meso_3354
PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll4342 phosphinotricin acetyltransferase.
       0.429
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 0.409
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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