Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3368PFAM: band 7 protein; KEGG: ret:RHE_PC00075 probable stomatin-like protein. (259 aa)    
Predicted Functional Partners:
Meso_3369
PFAM: protein of unknown function DUF107; KEGG: sme:SMb20990 probable membrane protein necessary for nodulation competitiveness.
 
    0.967
ftsH
Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.817
Meso_2792
PFAM: cytochrome c oxidase, subunit II cytochrome c, class I; KEGG: sme:SMb21368 putative cytochrome c oxidase chain II protein.
   
 
 0.759
Meso_2428
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sil:SPO0833 formate dehydrogenase, beta subunit.
   
 0.733
Meso_2736
PFAM: protein of unknown function DUF107; KEGG: mlo:mlr3022 hypothetical protein.
  
 
 0.598
Meso_3370
TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta-domain; KEGG: bms:BRA1148 outer membrane autotransporter.
       0.506
Meso_1748
Protease FtsH subunit HflC; HflC and HflK could regulate a protease.
  
     0.484
Meso_0753
PFAM: protein of unknown function DUF179; KEGG: mlo:mlr7511 putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
  
    0.482
Meso_0431
PFAM: peptidase M16-like; KEGG: mlo:mlr8256 protease.
  
 0.466
Meso_1749
Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.
  
   
 0.457
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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