Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3388Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (220 aa)    
Predicted Functional Partners:
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
       0.838
Meso_3390
MiaB-like tRNA modifying enzyme; KEGG: mlo:mlr4319 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family MiaB-like tRNA modifying enzyme; PFAM: deoxyribonuclease/rho motif-related TRAM protein of unknown function UPF0004 Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
       0.816
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.816
Meso_3392
PFAM: protein of unknown function DUF1328; KEGG: mlo:msr4317 hypothetical protein.
       0.557
Meso_3393
PFAM: outer membrane lipoprotein omp19; KEGG: sme:SMc02475 putative outer membrane lipoprotein precursor.
 
     0.543
Meso_3355
KEGG: mlo:mlr4340 hypothetical protein.
 
     0.523
Meso_0440
KEGG: mlo:msl8272 hypothetical protein.
  
     0.465
Meso_3345
KEGG: mlo:mlr4354 hypothetical protein.
 
     0.459
Meso_2216
PFAM: protein of unknown function DUF1153; KEGG: mlo:msl2821 hypothetical protein.
  
     0.446
Meso_3394
PFAM: AFG1-like ATPase; KEGG: mlo:mll4310 hypothetical protein.
 
     0.433
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.