Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3393PFAM: outer membrane lipoprotein omp19; KEGG: sme:SMc02475 putative outer membrane lipoprotein precursor. (178 aa)    
Predicted Functional Partners:
Meso_0960
KEGG: mlo:mll7791 hypothetical protein.
  
     0.752
Meso_0939
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.737
Meso_1971
KEGG: mlo:mlr7894 hypothetical protein.
  
     0.732
Meso_1984
AsmA; PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein.
  
     0.726
Meso_2154
KEGG: sme:SMc02685 hypothetical protein.
  
     0.726
Meso_1408
KEGG: bmf:BAB1_1043 hypothetical protein.
  
     0.721
Meso_3394
PFAM: AFG1-like ATPase; KEGG: mlo:mll4310 hypothetical protein.
       0.721
Meso_1460
KEGG: mlo:mll0525 hypothetical protein.
  
     0.715
Meso_1131
KEGG: mlo:mlr8393 hypothetical protein.
  
     0.709
Meso_0761
KEGG: bmb:BruAb1_0508 lipoprotein, hypothetical.
  
     0.702
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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