Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_3407PFAM: protein of unknown function DUF1192; KEGG: mlo:msr3768 hypothetical protein. (61 aa)    
Predicted Functional Partners:
Meso_3408
PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr3769 transmembrane transport protein.
       0.667
Meso_3406
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mll3767 NADPH quinone oxidoreductase.
       0.615
Meso_3404
PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mlr3870 ABC transporter, ATP-binding protein.
       0.450
Meso_3405
TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: mlo:mlr3869 hypothetical protein.
       0.450
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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