Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3414PFAM: protein of unknown function DUF1013; KEGG: bmb:BruAb1_1722 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Meso_1982
PFAM: protein of unknown function DUF1321; KEGG: mlo:mlr1474 hypothetical protein.
  
   
 0.785
Meso_3485
PFAM: import inner membrane translocase, subunit Tim44; KEGG: bms:BR2074 hypothetical protein.
  
     0.760
lysS
PFAM: Lysyl-tRNA synthetase, class 1c; KEGG: bhe:BH00240 lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.758
Meso_3367
KEGG: mlo:mll3968 hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.753
Meso_3580
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: mlo:mll5084 hypothetical protein.
  
     0.724
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.708
Meso_3581
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: mlo:mll5083 ATP-dependent nuclease subunit A; Belongs to the helicase family. UvrD subfamily.
  
     0.688
Meso_0911
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
   
    0.635
Meso_3599
PFAM: glutathione S-transferase-like; KEGG: mlo:mlr4635 glutathione S-transferase.
  
     0.607
rpmI
PFAM: ribosomal protein L35; KEGG: bmb:BruAb1_2094 RpmI, ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
    0.602
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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