Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3419PFAM: Heparinase II/III-like; KEGG: mlo:mlr4100 hypothetical protein. (568 aa)    
Predicted Functional Partners:
Meso_3416
PFAM: protein of unknown function DUF1674; KEGG: sil:SPO3377 hypothetical protein.
 
     0.729
Meso_3418
PFAM: Fmu (Sun) NusB/RsmB/TIM44; KEGG: mlo:mlr4098 hypothetical protein, similarity to RNA-binding Sun protein, putative Fmu protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.724
Meso_3210
KEGG: mlo:mll4075 hypothetical protein.
  
     0.677
purH
IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme MGS-like; KEGG: mlo:mlr4101 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase.
       0.640
Meso_3199
PFAM: HemY-like Tetratricopeptide TPR_2; KEGG: mlo:mll4218 weak similarity to E. coli HemY protein.
  
     0.612
htpX
Heat shock protein. Metallo peptidase. MEROPS family M48B; PFAM: peptidase M48, Ste24p; KEGG: sme:SMc04091 putative protease transmembrane protein; Belongs to the peptidase M48B family.
       0.605
Meso_3572
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mlo:mll5094 two-component sensor histidine kinase ExoS.
  
     0.603
Meso_2216
PFAM: protein of unknown function DUF1153; KEGG: mlo:msl2821 hypothetical protein.
  
     0.593
Meso_3580
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: mlo:mll5084 hypothetical protein.
  
     0.582
Meso_3610
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr5215 hypothetical protein.
  
     0.582
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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