Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3451TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; KEGG: mlo:mll4000 carboxyl-terminal protease; Belongs to the peptidase S41A family. (444 aa)    
Predicted Functional Partners:
Meso_3452
PFAM: peptidase M23B; KEGG: mlo:mll4002 filament-A precursor [Bartonella bacilliformis].
 
  
 0.950
Meso_0712
Tetratricopeptide TPR_2; PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7432 hypothetical protein.
 
 
 
 0.834
Meso_1712
PFAM: peptidase M48, Ste24p Tetratricopeptide TPR_2; KEGG: mlo:mll0209 hypothetical protein.
  
 
 0.711
Meso_3951
PFAM: NLP/P60; KEGG: bmb:BruAb1_2152 NLP/P60 family protein.
    
 
 0.709
rppH
NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
 
   
 0.686
Meso_0114
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: bpm:BURPS1710b_2048 putative membrane protein.
  
 
 0.663
Meso_0612
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: sme:SMa0166 hypothetical protein.
  
 
 0.663
Meso_3954
PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mll5605 hypothetical protein.
  
 
 0.663
Meso_0935
TIGRFAM: conserved hypothetical protein; KEGG: bur:Bcep18194_B2349 hypothetical protein.
    
 
 0.648
rlmH
Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.567
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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