Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3452PFAM: peptidase M23B; KEGG: mlo:mll4002 filament-A precursor [Bartonella bacilliformis]. (423 aa)    
Predicted Functional Partners:
Meso_3451
TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; KEGG: mlo:mll4000 carboxyl-terminal protease; Belongs to the peptidase S41A family.
 
  
 0.950
Meso_3090
PFAM: protein of unknown function DUF214; KEGG: mlo:mlr3523 similar to cell division protein FtsX.
 
 
 
 0.920
Meso_1709
PFAM: cell wall hydrolase/autolysin; KEGG: mlo:mlr0213 N-acetylmuramoyl-L-alanine amidase.
 
 
 0.899
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 
 0.876
Meso_1712
PFAM: peptidase M48, Ste24p Tetratricopeptide TPR_2; KEGG: mlo:mll0209 hypothetical protein.
 
 
 
 0.796
Meso_3199
PFAM: HemY-like Tetratricopeptide TPR_2; KEGG: mlo:mll4218 weak similarity to E. coli HemY protein.
  
     0.692
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.682
Meso_3450
PFAM: protein of unknown function DUF610, YibQ; KEGG: mlo:mll3999 hypothetical protein.
 
     0.675
rppH
NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
  
   0.620
Meso_3317
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: mlo:mlr4475 putative DNA polymerase III, delta subunit.
 
     0.601
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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