Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3473PFAM: protein of unknown function DUF255; KEGG: mlo:mlr4484 hypothetical protein. (676 aa)    
Predicted Functional Partners:
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.632
rsmG
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
       0.474
mnmG
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
       0.474
Meso_0046
KEGG: jan:Jann_3574 hypothetical protein.
    
   0.463
Meso_0047
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat.
    
   0.463
Meso_0048
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat.
    
   0.463
Meso_0283
KEGG: sme:SMc03043 chemotaxis precursor (motility protein C) transmembrane.
    
   0.463
Meso_0348
KEGG: mlo:mll1853 hypothetical protein.
    
   0.463
Meso_1515
TIGRFAM: conserved repeat domain; KEGG: sme:SMc01710 hypothetical protein.
    
   0.463
Meso_1516
KEGG: ttj:TTHB183 hypothetical protein.
    
   0.463
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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