Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3487PFAM: Smr protein/MutS2; KEGG: bmb:BruAb1_2051 Smr family protein. (180 aa)    
Predicted Functional Partners:
Meso_3486
MltA; PFAM: MltA 3D; KEGG: mlo:mlr4546 outer membrane lipoprotein GNA33, membrane-bound lytic murein transglycosylase.
 
     0.860
Meso_3488
Transcriptional regulator, XRE family; PFAM: helix-turn-helix motif; KEGG: mlo:mlr4548 transcriptional regulator.
 
     0.858
Meso_3485
PFAM: import inner membrane translocase, subunit Tim44; KEGG: bms:BR2074 hypothetical protein.
 
     0.793
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.657
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
   0.655
rpsG
SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.652
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
   
   0.647
rpmI
PFAM: ribosomal protein L35; KEGG: bmb:BruAb1_2094 RpmI, ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
    
 
 0.643
rplT
LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
 
 0.643
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
 
 0.643
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.