Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3500PFAM: 2OG-Fe(II) oxygenase; KEGG: mlo:mlr5099 alkylated DNA repair protein. (204 aa)    
Predicted Functional Partners:
Meso_3501
PFAM: Class I peptide chain release factor; KEGG: mlo:mlr5097 hypothetical protein.
 
    0.718
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
       0.510
Meso_2104
TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: mlo:mlr2526 methylated-DNA-protein-cystein methyltransferase.
  
  
 0.442
Meso_3025
PFAM: HhH-GPD; KEGG: bmb:BruAb1_1634 base-excision DNA repair protein.
     
 0.439
Meso_0782
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase Xylose isomerase-like TIM barrel; KEGG: ret:RHE_PC00215 putative 4-hydroxyphenylpyruvate dioxygenase protein.
   
    0.409
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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