Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3506KEGG: sme:SMb20414 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Meso_3507
PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ret:RHE_PF00134 putative nucleoside-diphosphate-sugar epimerase protein.
 
     0.943
Meso_3508
PFAM: Rieske [2Fe-2S] region FAD dependent oxidoreductase; KEGG: cef:CE2887 hypothetical protein.
       0.775
Meso_3509
KEGG: tfu:Tfu_0892 hypothetical protein.
       0.773
Meso_3504
KEGG: noc:Noc_0305 hypothetical protein.
       0.617
Meso_3505
PFAM: Thiolase; KEGG: sme:SMc00262 putative 3-ketoacyl-CoA thiolase protein; Belongs to the thiolase-like superfamily. Thiolase family.
       0.615
Meso_3510
KEGG: sme:SMb21362 hypothetical membrane-anchored protein.
       0.542
Meso_3511
KEGG: sme:SMb21361 hypothetical membrane-anchored protein.
       0.538
Meso_3503
PFAM: luciferase-like; KEGG: sil:SPO2518 bacterial luciferase family protein.
       0.438
Meso_3512
KEGG: sme:SMb20339 hypothetical protein.
       0.436
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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