Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3515KEGG: ret:RHE_PF00059 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Meso_3516
PFAM: protein of unknown function DUF892; KEGG: xac:XAC2155 hypothetical protein.
 
  
 0.819
Meso_2675
Maltooligosyl trehalose hydrolase; KEGG: rsp:RSP_2450 putative alpha-amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain.
  
  
 0.663
Meso_2676
Glycogen debranching enzyme GlgX; KEGG: rsp:RSP_2449 putative glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; Belongs to the glycosyl hydrolase 13 family.
   
  
 0.646
Meso_2678
Trehalose synthase; KEGG: rsp:RSP_2446 putative trehalose synthase; TIGRFAM: trehalose synthase trehalose synthase-fused probable maltokinase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain.
  
    0.605
Meso_3514
KEGG: xcb:XC_2191 fatty acid alpha hydroxylase.
       0.553
Meso_3684
PFAM: cyclase/dehydrase; KEGG: rsp:RSP_3103 hypothetical protein.
 
    0.540
Meso_3513
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A HI0933-like protein FAD dependent oxidoreductase; KEGG: xcv:XCV3947 putative NADH dehydrogenase.
       0.520
Meso_3683
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rsp:RSP_3104 putative glutathione-dependent formaldehyde dehydrogenase.
 
    0.456
Meso_4071
PFAM: protein of unknown function DUF892; KEGG: mlo:mll4608 YcfI, putative structural proteins.
 
  
 0.420
Meso_1070
KEGG: bur:Bcep18194_A4907 hypothetical protein.
  
     0.407
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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