Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3523PFAM: Allergen V5/Tpx-1 related; KEGG: tel:tll1411 hypothetical protein. (188 aa)    
Predicted Functional Partners:
Meso_3524
Hypothetical protein.
       0.773
Meso_3525
Quinoprotein glucose dehydrogenase; PFAM: Pyrrolo-quinoline quinone; KEGG: ilo:IL0790 glucose dehydrogenase.
       0.773
Meso_0929
Hypothetical protein.
  
 
  0.750
Meso_4054
KEGG: cbu:CBU_0902 hypothetical protein.
  
 
  0.700
Meso_0477
PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
   
   0.649
Meso_2497
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: bbr:BB0402 putative branched-chain amino acid transport permease; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
   
   0.649
Meso_3324
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: bja:blr5672 ABC transporter permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
   
   0.649
Meso_3510
KEGG: sme:SMb21362 hypothetical membrane-anchored protein.
  
     0.446
Meso_3526
PFAM: protein of unknown function DUF892; KEGG: rpa:RPA3726 hypothetical protein.
       0.433
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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