Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3528PFAM: Erythromycin esterase; KEGG: ppu:PP3231 hypothetical protein. (447 aa)    
Predicted Functional Partners:
Meso_3530
PFAM: phosphoribosyltransferase; KEGG: sme:SMc01463 hypothetical protein.
     0.983
Meso_1801
PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: mlo:mll1078 L-isoaspartyl protein carboxyl methyltransferase.
      0.856
Meso_1568
PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mlo:mll1108 protein-L-isoaspartate O-methyltransferase.
 
      0.828
Meso_3527
KEGG: sme:SMc01448 hypothetical protein.
 
     0.820
Meso_3529
PFAM: beta-lactamase-like; KEGG: dra:DR0658 hypothetical protein.
 
     0.764
Meso_0925
KEGG: ret:RHE_PE00163 hypothetical protein.
   
    0.584
Meso_3911
KEGG: ade:Adeh_3213 hypothetical protein.
   
    0.584
Meso_3531
KEGG: reu:Reut_B4443 hypothetical protein.
       0.576
Meso_3526
PFAM: protein of unknown function DUF892; KEGG: rpa:RPA3726 hypothetical protein.
       0.486
Meso_2035
PFAM: CBS domain containing protein; KEGG: ret:RHE_CH02435 putative inosine-5'-monophosphate dehydrogenase protein.
 
     0.423
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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