Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3560Transcriptional regulator, MarR family; PFAM: ROK domain containing protein; KEGG: rsp:RSP_1441 regulatory protein, GntR family. (374 aa)    
Predicted Functional Partners:
Meso_3554
PFAM: sugar isomerase (SIS); KEGG: rsp:RSP_1447 possible glucosamine--fructose-6-phosphate aminotransferase (isomerizing).
 
  
 0.799
Meso_3555
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: rsp:RSP_1446 putative sugar kinase.
 
     0.675
Meso_3559
PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_1442 ABC sugar transporter, periplasmic sugar-binding protein; TC 3.A.1.1.-.
 
  
 0.663
Meso_2863
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: bmb:BruAb2_0322 NagA, N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.485
Meso_3557
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1444 ABC sugar transporter, inner membrane subunit; TC 3.A.1.1.-.
     
 0.419
Meso_3558
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1443 ABC sugar transporter, inner membrane subunit; TC 3.A.1.1.-.
     
 0.418
Meso_0456
Mannose-6-phosphate isomerase, type 2; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II Nucleotidyl transferase Cupin 2, conserved barrel; KEGG: bms:BRA0347 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
     
 0.406
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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