Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3566KEGG: cgb:cg3349 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Meso_3565
Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel; KEGG: jan:Jann_2910 cupin 2 protein.
 
  
 0.994
Meso_0053
TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel; KEGG: pae:PA2470 gentisate 1,2-dioxygenase.
 
  
 0.973
Meso_3562
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: jan:Jann_2909 5-carboxymethyl-2-hydroxymuconate delta-isomerase.
    
  0.971
Meso_0054
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bte:BTH_II1389 fumarylacetoacetate hydrolase family protein.
    
  0.903
Meso_3276
Gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel; KEGG: eba:ebA5613 putative gentisate 1,2-dioxygenase oxidoreductase protein.
 
   
 0.754
Meso_3564
PFAM: regulatory protein, MarR; KEGG: bja:bll4221 transcriptional regulatory protein.
       0.741
Meso_3563
TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: mlo:mlr1135 maleylacetoacetate isomerase.
       0.721
Meso_0052
3-hydroxybenzoate 6-hydroxylase; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bur:Bcep18194_B1886 monooxygenase, FAD-binding.
 
   
 0.436
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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