Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3568KEGG: mlo:mlr3177 hypothetical protein. (161 aa)    
Predicted Functional Partners:
Meso_3569
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada; KEGG: mlo:mlr3180 O6-methylguanine-DNA methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; SMART: Helix-turn-helix, AraC type.
       0.704
Meso_2074
PFAM: protein of unknown function DUF983; KEGG: ret:RHE_CH01276 hypothetical protein.
  
     0.702
nth
Endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.686
Meso_1352
PFAM: protein of unknown function DUF983; KEGG: mlo:mlr0842 hypothetical protein.
  
     0.656
Meso_4042
PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mlo:mlr5307 two-component, sensor histidine protein kinase.
  
     0.532
Meso_1039
PFAM: protein of unknown function DUF1467; KEGG: mlo:msl1345 hypothetical protein.
  
     0.506
Meso_3257
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr3815 hypothetical protein.
  
     0.471
Meso_2738
KEGG: mlo:mlr3024 hypothetical protein.
  
     0.464
Meso_2186
PFAM: NUDIX hydrolase; KEGG: bmb:BruAb1_1552 MutT/nudix family protein.
  
     0.460
Meso_3097
TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein.
  
     0.459
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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