Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Meso_3587PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr4741 short chain dehydrogenase/reductase. (255 aa)    
Predicted Functional Partners:
Meso_2580
TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.910
Meso_0451
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
     
 0.900
Meso_0843
Galactose 1-dehydrogenase; PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: sme:SMc00588 putative D-galactose 1-dehydrogenase protein.
     
  0.900
Meso_3588
PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: bme:BMEI1997 gluconolactonase.
 
    0.825
Meso_2581
PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase.
  
 0.760
Meso_0981
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7832 probable oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.655
Meso_3522
PFAM: short-chain dehydrogenase/reductase SDR SEC-C motif; KEGG: sme:SMc01204 putative transmembrane oxidoreductase protein oxidoreductase.
 
 
  0.647
Meso_1537
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr0808 3-oxoacyl-[acyl-carrier protein] reductase.
  
     0.542
Meso_3682
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PB00044 putative short chain oxidoreductase protein.
  
 
  0.515
Meso_3590
Acetolactate synthase, large subunit; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: ret:RHE_PF00274 acetolactate synthase, large subunit protein (thiamine pyrophosphate-dependent enzyme).
   
  0.503
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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