STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Meso_3605TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: rpa:RPA3219 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL). (647 aa)    
Predicted Functional Partners:
Meso_2106
Diguanylate phosphodiesterase; PFAM: EAL; KEGG: mlo:mll2537 hypothetical protein.
 
  
 0.815
Meso_0757
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: bms:BR0481 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL Diverse 7TM receptor, extracellular region 2 Diverse 7TM receptor, transmembrane region PAS fold-3; SMART: PAC motif.
 
 
0.756
Meso_3680
Multi-sensor hybrid histidine kinase; KEGG: mlo:mlr3215 two-component sensor/response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; SMART: PAS.
 
 0.536
Meso_1942
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator.
  
  
 0.483
Meso_3606
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
       0.470
Meso_0381
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mlo:mll4839 hypothetical protein.
 
 
0.467
Meso_1742
TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mlo:mll1446 hypothetical protein.
 
 
0.457
Meso_0600
CheA signal transduction histidine kinase; PFAM: response regulator receiver CheW-like protein ATP-binding region, ATPase-like Hpt; KEGG: sme:SMa1558 putative histidine kinase, chemotaxis.
 
  
 0.446
Meso_1904
KEGG: ret:RHE_PE00024 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif.
 
 
 0.440
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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