Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_3684PFAM: cyclase/dehydrase; KEGG: rsp:RSP_3103 hypothetical protein. (219 aa)    
Predicted Functional Partners:
Meso_3683
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rsp:RSP_3104 putative glutathione-dependent formaldehyde dehydrogenase.
 
    0.948
Meso_3685
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2310 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.855
Meso_3682
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PB00044 putative short chain oxidoreductase protein.
 
     0.853
Meso_3686
PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: sme:SMb20099 putative trehalose synthase protein.
 
    0.615
Meso_1876
PFAM: manganese containing catalase; KEGG: ana:alr0998 putative catalase.
 
    0.556
Meso_3515
KEGG: ret:RHE_PF00059 hypothetical protein.
 
    0.540
Meso_2784
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ret:RHE_PB00051 putative oxidoreductase protein.
 
    0.537
Meso_2775
KEGG: rsp:RSP_0515 hypothetical protein.
  
     0.496
Meso_2777
KEGG: ret:RHE_PB00055 hypothetical protein.
  
     0.467
Meso_2678
Trehalose synthase; KEGG: rsp:RSP_2446 putative trehalose synthase; TIGRFAM: trehalose synthase trehalose synthase-fused probable maltokinase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain.
  
    0.457
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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