STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Meso_3700Xylono-1,4-lactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: gox:GOX1793 transcriptional regulator. (289 aa)    
Predicted Functional Partners:
Meso_3701
PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: oih:OB2752 sorbitol dehydrogenase.
  
  
 0.786
Meso_3703
5-dehydro-2-deoxygluconokinase; PFAM: PfkB; KEGG: plu:plu1801 unnamed protein product; similar to myo-inositol catabolism protein IolC of Bacillus subtilis; Belongs to the carbohydrate kinase PfkB family.
     
 0.779
Meso_3702
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: hch:HCH_05772 transcriptional regulator.
       0.773
Meso_3704
PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Insect alcohol dehydrogenase family; KEGG: gka:GK1683 short chain dehydrogenase.
  
    0.531
Meso_3525
Quinoprotein glucose dehydrogenase; PFAM: Pyrrolo-quinoline quinone; KEGG: ilo:IL0790 glucose dehydrogenase.
     
 0.530
Meso_1074
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: bja:blr6118 hypothetical protein.
 
   
 0.493
Meso_3705
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20856 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor; TC 3.A.1.2.-.
       0.424
Meso_3550
PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: mlo:mll7149 mandelate racemase.
 
   
 0.421
Meso_3770
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: bja:bll6697 putative glconolactonase.
  
     0.415
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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