Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Meso_3717PFAM: Xylose isomerase-like TIM barrel. (288 aa)    
Predicted Functional Partners:
Meso_3716
PFAM: Cupin Cupin 2, conserved barrel; KEGG: hma:rrnB0187 putative cupin.
  
    0.775
Meso_3718
KEGG: ctc:CTC01793 transcriptional regulator.
       0.773
Meso_3719
PFAM: protein of unknown function UPF0261; KEGG: hma:rrnB0188 hypothetical protein.
       0.773
Meso_3703
5-dehydro-2-deoxygluconokinase; PFAM: PfkB; KEGG: plu:plu1801 unnamed protein product; similar to myo-inositol catabolism protein IolC of Bacillus subtilis; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.479
Meso_3720
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_0073 transcriptional regulator, GntR family.
       0.478
Meso_0455
5-deoxyglucuronate isomerase; PFAM: Myo-inositol catabolism IolB region; KEGG: atc:AGR_L_719 putative myo-inositol catabolism protein.
  
  
 0.451
Meso_3715
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB2985 hypothetical protein.
  
    0.448
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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