Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Meso_3725PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase; Belongs to the HpcH/HpaI aldolase family. (279 aa)    
Predicted Functional Partners:
Meso_3726
PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein.
       0.686
Meso_2504
TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; KEGG: jan:Jann_3499 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.658
Meso_1076
PFAM: Hydratase/decarboxylase; KEGG: reu:Reut_B5691 4-oxalocrotonate decarboxylase.
 
  
 0.654
Meso_2508
PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bms:BRA1162 5-carboxymethyl-2-hydroxymuconate delta isomerase.
 
  
 0.440
Meso_3727
KEGG: eba:ebA5654 ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; Belongs to the ABC transporter superfamily.
       0.435
Meso_3728
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA5655 putative peptide ABC transporter permease protein.
       0.435
Meso_3729
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA5658 putative peptide ABC transporter permease protein.
       0.435
Meso_3724
KEGG: lpp:lpp1962 hypothetical protein.
       0.422
Your Current Organism:
Chelativorans sp. BNC1
NCBI taxonomy Id: 266779
Other names: C. sp. BNC1, Mesorhizobium sp. BNC1
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